BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= lcl|P76387|WZC_ECOLI No comment found
         (189 letters)

Database: /bigdb2/uniprot/sp_sptr.fas 
           6,074,524 sequences; 1,974,850,328 total letters

Searching
12 occurrence(s) of pattern in query
Due to variable wildcards pattern   BYK_CD; PATTERN.
 is likely to occur too many times in a single sequence
done



 ***** No hits found ******

  Database: /bigdb2/uniprot/sp_sptr.fas
    Posted date:  May 7, 2008  4:53 AM
  Number of letters in database: 997,182,526
  Number of sequences in database:  2,817,429
  
  Database: /bigdb2/uniprot/sp_sptr.fas.01
    Posted date:  May 7, 2008  4:57 AM
  Number of letters in database: 977,667,802
  Number of sequences in database:  3,257,095
  
Lambda     K      H      C
   0.267   0.0410    0.140    0.500 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 0
Number of Sequences: 6074524
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 189
length of database: 1,974,850,328
effective HSP length: 125
effective length of query: 64
effective length of database: 1,215,534,828
effective search space: 77794228992
effective search space used: 77794228992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)